Optical Highlighter Fluorescent Protein Literature Sources
Section Overview:
The ability to selectively initiate or alter fluorescence emission profiles in photoconversion optical highlighter proteins renders these probes as excellent tools for exploring protein behavior in living cells. As the fluorescence intensity (or color spectrum) of highlighters occurs only after photon-mediated conversion, newly synthesized non-photoactivated protein pools remain unobserved and do not complicate experimental results. This section lists sources for review articles and original research reports on optical highlighter fluorescent proteins.
Literature Sources
- Ando, R., Hama, H., Yamamoto-Hino, M., Mizuno, H., and Miyawaki, A., An optical marker based on the UV-induced green-to-red-photoconversion of a fluorescent protein., Proceedings of the National Academy of Sciences (USA) 99: 12651-12656 (2002).
| PubMed | - Ando, R., Mizuno, H., and Miyawaki, A., Regulated fast nucleocytoplasmic shuttling observed by reversible protein highlighting., Science 306: 1370-1373 (2004).
| PubMed | - Andresen, M., Wahl, M. C., Stiel, A. C., Gräter, F., Schäfer, L. V., Trowitzsch, S., Weber, G., Eggeling, C., Grubmüller, H., Hell, S. W., and Jakobs, S., Structure and mechanism of the reversible photoswitch of a fluorescent protein., Proceedings of the National Academy of Sciences (USA) 102: 13070-13074 (2005). | PubMed |
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- Bates, M., Blosser, T. R., and Zhuang, X., Short-range spectroscopic ruler based on a single-molecule optical switch., Physical Review Letters 94: 108101 (2005). | PRL |
- Bell, A. F., Stoner-Ma, D., Wachter, R. M., and Tonge, P. J., Light-driven decarboxylation of wild-type green fluorescent protein., Journal of the American Chemical Society 125: 6919-6926 (2003). | PubMed |
- Chattoraj, M., King, B. A., Bublitz, G. U., and Boxer, S. G., Ultra-fast excited state dynamics in green fluorescent protein: Multiple states and proton transfer., Proceedings of the National Academy of Sciences (USA) 93: 8362-8367 (1996). | PubMed |
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- Chudakov, D. M., Belousov, V. V., Zaraisky, A. G., Novoselov, V. V., Staroverov, D. B., Zorov, D. B., Lukyanov, S., and Lukyanov, K. A., Kindling fluorescent proteins for precise in vivo photolabeling., Nature Biotechnology 21: 191-194 (2003). | PubMed |
- Chudakov, D. M., Feofanov, A. V., Mudrik, N. N., Lukyanov, S., and Lukyanov, K. A., Chromophore environment provides clues to "kindling fluorescent protein" riddle., Journal of Biological Chemistry 278: 7215-7219 (2003). | PubMed |
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- Chudakov, D. M., Verkhusha, V. V., Staroverov, D. B., Souslova, E. A., Lukyanov, S., and Lukyanov, K. A., Photoswitchable cyan fluorescent protein for protein tracking., Nature Biotechnology 22: 1435-1439 (2004). | PubMed |
- Cinelli, R. A. G., Pellegrini, V., Ferrari, A., Faraci, P., Nifosi, R., Tyagi, M., Giacca, M., and Beltram, F., Green fluorescent proteins as optically controllable elements in bioelectronics., Applied Physics Letters 79: 3353-3355 (2001). | APL |
- Cotlet, M., Habuchi, S., De Schryver, F. C., and Hofkens, J., Spectroscopy and microscopy of the autofluorescent protein DsRed from Discosoma genus coral., Proceedings of the International Society for Optical Engineering (SPIE) 5329: 88-98 (2004). | SPIE |
- Cotlet, M., Hofkens, J., Köhn, F., Michiels, J., Dirix, G., Van Guyse, M., Vanderleyden, J., and De Schryver, F. C., Collective effects in individual oligomers of the red fluorescent coral protein DsRed., Chemical Physics Letters 336: 415-423 (2001). | CPL |
- Cotlet, M., Hofkens, J., Maus, M., Gensch, T., Van der Auweraer, M., Michiels, J., Dirix, G., Van Guyse, M., Vanderleyden, J., Visser, A. J. W. G., and De Scheyver, F. C., Excited-state dynamics in the enhanced green fluorescent protein mutant probed by picosecond time-resolved single photon counting spectroscopy., Journal of Physical Chemistry B 105: 4999-5006 (2001). | JPCB |
- Creemers, T. M. H., Lock, A. J., Subramanium, V., Jovin, T. M., and Volker, S., Three photoconvertible forms of green fluorescent protein identified by spectral hole-burning., Nature Structural Biology 6: 557-560 (1999). | PubMed |
- Deryusheva, S. and Gall, J. G., Dynamics of coilin in Cajal bodies of the Xenopus germinal vesicle., Proceedings of the National Academy of Sciences (USA) 101: 4810-4814 (2004). | PubMed |
- Dickson, R. M., Cubitt, A. B., Tsien, R. Y., and Moerner, W. E., On/off blinking and switching behavior of single molecules of green fluorescent protein., Nature 388: 355-358 (1997). | PubMed |
- Dittrich, P. S., Schäfer, S. P., and Schwille, P., Characterization of the photoconversion on reaction of the fluorescent protein Kaede on the single-molecule level., Biophysical Journal 89: 3446-3455 (2005). | PubMed |
- Dunn, G. A., Dobbie, I. M., Monypenny, J., Holt, M. R., and Zicha, D., Fluorescence localization after photobleaching (FLAP): A new method for studying protein dynamics in living cells., Journal of Microscopy 205: 109-112 (2002). | PubMed |
- Eisenstein, M., New fluorescent protein includes handy on-off switch., Nature Methods 2: 8-9 (2005). | Nature Methods |
- Elowitz, M. B., Surette, M. G., Wolf, P. E., Stock, J. B., and Leibler, S., Photoactivation turns green fluorescent protein red., Current Biology 7: 809-812 (1997). | PubMed |
- Elowitz, M. B., Surette, M. G., Wolf, P. E., Stock, J. B., and Liebler, S., Protein mobility in the cytoplasm of Escherichia coli., Journal of Bacteriology 181: 197-203 (1999). | PubMed |
- Evanko, D., Highlighting protein movement in living cells., Nature Methods 1: 96-97 (2004). | Nature Methods |
- Fischer, A. J., Coleman, W. J., Yang, M. M., and Lagarias, J. C., Engineering phytochromes: Biliproteins that switch and glow., Proceedings of the International Society for Optical Engineering (SPIE) 5329: 33-43 (2004). | SPIE |
- Gurskaya, N. G., Fradkov, A. F., Pounkova, N. I., Staroverov, D. B., Bulina, M. E., Yanushevich, Y. G., Labas, Y. A., Lukyanov, S., and Lukyanov, K. A., A colourless green fluorescent protein homologue from the non-fluorescent hydromedusa Aequorea coerulescens and its fluorescent mutants., Biochemical Journal 373: 403-408 (2003). | PubMed |
- Gurskaya, N. G., Verkhusha, V. V., Shcheglov, A. S., Staroverov, D. B., Chepurnykh, T. V., Fradkov, A. F., Lukyanov, S., and Lukyanov, K. A., Engineering of a monomeric green-to-red photoactivatable fluorescent protein induced by blue light., Nature Biotechnology 24: 461-465 (2006). | PubMed |
- Habuchi, S., Ando, R., Dedecker, P., Verheijen, W., Mizuno, H., Miyawaki, A., and Hofkens, J., Reversible single-molecule photoswitching in the GFP-like fluorescent protein Dronpa., Proceedings of the National Academy of Sciences (USA) 102: 9511-9516 (2005).
| PubMed | - Habuchi, S., Cotlet, M., Gensch, T., Bednarz, T., Haber-Pohlmeier, S., Rozenski, J., Dirix, G., Michiels, J., Vanderleyden, J., Herberle, J., De Schryver, F. C., and Hofkens, J., Evidence for the isomerization and decarboxylation in the photoconversion of the red fluorescent protein DsRed., Journal of the American Chemical Society 127: 8977-8984 (2005).
| PubMed | - Hell, S. W., Strategy for far-field optical imaging and writing without diffraction limit., Physics Letters A 326: 140-145 (2004). | PLA |
- Henderson, J. N. and Remington, S. J., The kindling fluorescent protein: A transient photoswitchable marker., Physiology 21: 162-170 (2006). | Physiology |
- Hofmann, M., Eggeling, C., Jakobs, S., and Hell, S. W., Breaking the diffraction barrier in fluorescence microscopy at low light intensities by using reversibly photoswitchable proteins., Proceedings of the National Academy of Sciences (USA) 102: 17565-17569 (2005). | PubMed |
- Hogan, H., Fluorescence at the flip of a molecular switch., Biophotonics International 12: 34-38 (2005). | BioPhotonics |
- Irie, M., Diarylethenes for memories and switches., Chemical Reviews 100: 1685-1716 (2000). | PubMed |
- Irie, M., Fukaminato, T., Sasaki, T., Tamai, N., and Kawai, T., Organic Chemistry: A digital fluorescent molecular photoswitch., Nature 420: 759-760 (2002). | PubMed |
- Ivanchenko, S., Roecker, C., Oswald, F., Wiedenmann, J., and Nienhaus, G. U., Targeted green-red photoconversion of EosFP, a fluorescent marker protein., Journal of Biological Physics 31: 249-259 (2005). | JBP |
- Izquierdo, M. A., Bell, T. D. M., Habuchi, S., Fron, E., Pilot, R., Vosch, T., De Feyter, S., Verhoeven, J., Jacob, J., Mullen, K., Hofkens, J., and De Schryver, F. C., Switching of the fluorescence emission of single molecules between the locally excited and charge transfer states., Chemical Physics Letters 401: 503-508 (2005). | CPL |
- Jakobs, S., Schauss, A. C., and Hell, S. W., Photoconversion of matrix targeted GFP enables analysis of continuity and intermixing of the mitochondrial lumen., FEBS Letters 554: 194-200 (2003). | PubMed |
- Jung, G., Wiehler, J., and Zumbusch, A., The photophysics of green fluorescent protein: Influence of the key amino acids at positions 65, 203, and 222., Biophysical Journal 88: 1932-1947 (2005). | PubMed |
- Karbowski, M., Arnoult, D., Chen, H., Chan, D. C., Smith, C. L., and Youle, R. J., Quantitation of mitochondrial dynamics by photolabeling of individual organelles shows that mitochondrial fusion is blocked during the Bax activation phase of apoptosis., Journal of Cell Biology 164: 493-499 (2004). | PubMed |
- Kennis, J. T. M., Larsen, D. S., van Stokkum, I. H. M., Vengris, M., van Thor, J. J., and van Grondelle, R., Uncovering the hidden ground state of green fluorescent protein., Proceedings of the National Academy of Sciences (USA) 101: 17988-17993 (2004).
| PubMed | - Labas, Y. A., Gurskaya, N. G., Yanushevich, Y. G., Fradkov, A. F., Lukyanov, K. A., Lukyanov, S. A., and Matz, M. V., Diversity and evolution of the green fluorescent protein family., Proceedings of the National Academy of Sciences (USA) 99: 4256-4261 (2002). | PubMed |
- Lee, W. L., Kim, M. K., Schreiber, A. D., and Grinstein, S., Role of ubiquitin and proteasomes in phagosome maturation., Molecular Biology of the Cell 16: 2077-2090 (2005). | PubMed |
- Liang, Y. C., Dvornikov, A. S., and Rentzepis, P. M., Nonvolatile read-out molecular memory., Proceedings of the National Academy of Sciences (USA) 100: 8109-8112 (2003). | PubMed |
- Lippincott-Schwartz, J., Altan-Bonnet, N., and Patterson, G. H., Photobleaching and photoactivation: Following protein dynamics in living cells., Nature Cell Biology 5: S7-S14 (2003). | PubMed |
- Lippincott-Schwartz, J. and Patterson, G. H., Development and use of fluorescent protein markers in living cells., Science 300: 87-91 (2003). | PubMed |
- Lukyanov, K. A., Chudakov, D. M., Lukyanov, S., and Verkhusha, V. V., Innovation: Photoactivatable fluorescent proteins., Nature Reviews Molecular Cell Biology 6: 885-891 (2005). | PubMed |
- Lukyanov, K. A., Fradkov, A. F., Gurskaya, N. G., Matz, M. V., Labas, Y. A., Savitsky, A. P., Markelov, M. L., Zaraisky, A. G., Zhao, X., Fang, Y., Tan, W., and Lukyanov, S. A., Natural animal coloration can be determined by a nonfluorescent green fluorescent protein homolog., Journal of Biological Chemistry 275: 25879-25882 (2000). | PubMed |
- Malvezzi-Campeggi, F., Jahnz, M., Heinze, K. G., Dittrich, P., and Schwille, P., Light-induced flickering of DsRed provides evidence for distinct and interconvertible fluorescent states., Biophysical Journal 81: 1776-1785 (2001). | PubMed |
- Marchant, J. S., Stutzmann, G. E., Leissring, M. A., LaFerla, F. M., and Parker, I., Multiphoton-evoked color change of DsRed as an optical highlighter for cellular and subcellular labeling., Nature Biotechnology 19: 645-649 (2001). | PubMed |
- Martynov, V. I., Savitsky, A. P., Martynova, N. Y., Savitsky, P. A., Lukyanov, K. A., and Lukyanov, S. A., Alternative cyclization in GFP-like proteins family., Journal of Biological Chemistry 276: 21012-21016 (2001). | PubMed |
- McAnaney, T. B., Zeng, W., Doe, C. F. E., Bhanji, N., Wakelin, S., Pearson, D. S., Abbyad, P., Shi, X., Boxer, S. G., and Bagshaw, C. R., Protonation, photobleaching, and photoactivation of yellow fluorescent protein (YFP 10C): A unifying mechanism., Biochemistry 44: 510-524 (2005). | PubMed |
- Mirabella, R., Franken, C., van der Krogt, G. N. M., Bisseling, T., and Geurts, R., Use of the fluorescent timer DsRed-E5 as reporter to monitor dynamics of gene activity in plants., Plant Physiology 135: 1879-1887 (2004). | PubMed |
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| PubMed | - Miyawaki, A., Fluorescent proteins in a new light., Nature Biotechnology 22: 1374-1376 (2004). | PubMed |
- Miyawaki, A., Innovations in the imaging of brain functions using fluorescent proteins., Neuron 48: 189-199 (2005). | PubMed |
- Mizuno, H., Mal, T. K., Tong, K. I., Ando, R., Furuta, T., Ikura, M., and Miyawaki, A., Photo-induced peptide cleavage in the green-to-red conversion of a fluorescent protein., Molecular Cell 12: 1051-1058 (2003). | PubMed |
- Nienhaus, G. U., Nienhaus, K., Hölze, A., Ivanchenko, S., Renzi, F., Oswald, F., Wolff, M., Schmitt, F., Röcker, C., Vallone, B., Wiedenmann, W., Heilker, R., Nar, H., and Wiedenmann, J., Photoconvertible fluorescent protein EosFP - Biophysical properties and cell biology applications., Photochemistry and Photobiology 82: 351-358 (2006). | PubMed |
- Nienhaus, K., Nienhaus, G. U., Wiedenmann, J., and Nar, H., Structural basis for photo-induced protein cleavage and green-to-red conversion of fluorescent protein EosFP., Proceedings of the National Academy of Sciences (USA) 102: 9156-9159 (2005).
| PubMed | - O'Connell, K. M. and Tamkun, M. M., Targeting of voltage-gated potassium channel isoforms to distinct cell surface microdomains., Journal of Cell Science 118: 2155-2166 (2005). | PubMed |
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| PubMed | - Runions, J., Brach, T., Kühner, S., and Hawes, C., Photoactivation of GFP reveals protein dynamics within the endoplasmic reticulum membrane., Journal of Experimental Botany 57: 43-50 (2006). | PubMed |
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- Wiedenmann, J., Ivanchenko, S., Oswald, F., Schmitt, F., Rocker, C., Salih, A., Spindler, K., and Nienhaus, G. U., EosFP, a fluorescent marker protein with UV-inducible green-to-red fluorescence conversion., Proceedings of the National Academy of Sciences (USA) 101: 15905-15910 (2004). | PubMed |
- Wiedenmann, J. and Nienhaus, G. U., Live-cell imaging with EosFP and other photoactivatable marker proteins of the GFP family., Expert Review of Proteomics 3: 361-374 (2006). | ERP |
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| PubMed | - Wilmann, P. G., Petersen, J., Devenish, R. J., Prescott, M., and Rossjohn, J., Variations on the GFP chromophore., Journal of Biological Chemistry 280: 2401-2404 (2005).
| PubMed | - Yampolsky, I. V., Remington, S. J., Martynov, V. I., Potapov, V. K., Lukyanov, S., and Lukyanov, K. A., Synthesis and properties of the chromophore of the asFP595 chromoprotein from Anemonia sulcata., Biochemistry 44: 5788-5793 (2005). | PubMed |
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- Zagranichny, V. E., Rudenko, N. V., Gorokhovatsky, A. Y., Zakharov, M. V., Shenkarev, Z. O., Balashova, T. A., and Arseniev, A. S., zFP538, a yellow fluorescent protein from coral, belongs to the DsRed subfamily of GFP-like proteins but possesses the unexpected site of fragmentation., Biochemistry 43: 4764-4772 (2004). | PubMed |